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Creators/Authors contains: "Wong, Yick Ching"

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  1. ; ; ; ; (, Future Generation Computer Systems)
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  2. ; ; (, Practice and Experience in Advanced Research Computing)
    The C-MĀIKI gateway is a science gateway that leverages a computational workload management API called Tapis to support modern, interoperable, and scalable microbiome data analysis. This project is focused on migrating an existing C-MĀIKI gateway pipeline from Tapis v2 to Tapis v3 so that it can take advantage of the new robust Tapis v3 features and stay modern. This requires three major steps: 1) Containerization of each existing microbiome workflow. 2) Create a new app definition for each of the workflows. 3) Enabling the ability to submit jobs to a SLURM scheduler inside of a singularity container to support the Nextflow workflow manager. This work presents the experience and challenges in upgrading the pipeline. 
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